Genetic Analysis of Complex Disease. Группа авторов

Чтение книги онлайн.

СКАЧАТЬ Mendelian dominant genetic factor 63 17 Genetic and environmental factors?

Table 3.3 Adoptive studies and disease etiology.

Frequency of disease in parents
Biological (%)	Adoptive (%)	Possible etiology
85	4	Genetic factors
4	85	Common familial environment

      While adoption studies are simple in theory, in reality, they are quite difficult to carry out. Achieving the necessary sample size can be challenging because of the need to identify the biological parents. Moreover, children are often placed in demographic environments similar to that of the biological parents, making it difficult to ensure that one can distinguish between genetics and environment. However, when these issues can be overcome, this approach can provide critical information regarding the etiology of complex traits. For example, this approach has been used to demonstrate that familial aggregation of multiple sclerosis is due to genetics and not a shared environment (Ebers et al. 1995), and to differentiate the role of genes and environment on various psychological measures (Bouchard, Jr. et al. 1990).

      Recurrence Risk in Relatives of Affected Individuals

      A trio of seminal manuscripts in complex genetic analysis, published by Neil Risch (1990a, b, c), evaluated methods for linkage analysis and determining the mode of inheritance of disease loci using affected relative pairs. The basis for these analyses is familial recurrence risk ratios (λ_R):

(3.3)

A greater risk for disease in the relatives (of type R) of an affected individual compared with the risk in the general population is consistent with the involvement of genetics in the disease etiology. Because λ_R is a ratio, usually any value over 1.0 is considered to provide evidence for the involvement of a familial component/genetics in a condition. It is generally accepted that the larger the recurrence risk ratio, the stronger the role of genetics in the disease etiology. But this does not always hold true. Notice that the denominator in Equation (3.3) is the risk of the condition in the general population. Thus, for some common diseases, λ_R is not large but that is due to the high frequency of the condition in the general population, not due to the lack of the involvement of genetics. For example, λ_sibling = 4 – 5 for Alzheimer disease (Roses et al. 1995) compared with λ_sibling = 100 for autism spectrum disorder (Bolton et al. 1994; Bailey et al. 1995). In both of these complex disorders, genetics plays a significant role, but the frequency of Alzheimer disease in the general population is much higher than that of autism spectrum disorder, which contributes to the difference in the λ_sibling values. Recurrence risk ratios are also population‐specific as the disease risk in the general population may vary by ethnicity or geographic location. Keep in mind that a high λ_R could result from a common familial environment rather than genetics.

      Risch (1990a) also demonstrated that the drop‐off in recurrence risk by degree of familial relation is related to the mode of inheritance. For a single‐gene model, λ_R –1 is expected to decrease by a factor of 2 with each decreasing degree of relation. For a multiplicative model, λ_R –1 will drop off more quickly with each degree of relation. Thus, by comparing the λ_R for various types of relatives, one can determine if the disorder is consistent with a particular inheritance pattern. Brown et al. (2000) found that the recurrence risks for ankylosing spondylitis were 8.2% for first‐degree relatives, 1.0% for second‐degree relatives, and 0.7% for third‐degree relatives. Because this drop‐off rate is more rapid than a factor of 2, a single‐gene model for genetic susceptibility to ankylosing spondylitis is not likely. Using the information on recurrence risks, the authors determined that the most likely mode of inheritance for ankylosing spondylitis was an oligogenic model with a multiplicative interaction between the loci.

      One can also use recurrence risks to make a rough estimate of the number of genes involved in a disorder if one assumes a particular inheritance pattern. For example, the λ_sibling = 100 for autism spectrum disorder (Bolton et al. 1994; Bailey et al. 1995). It is clear that autism spectrum disorder does not follow a Mendelian mode of inheritance, and in fact, is more consistent with an epistatic interaction of multiple loci (Jorde et al. 1991). If we assume that there are four genes contributing an equal, additive effect to the genetic susceptibility, the λ_sibling for each locus would be 25 (25 + 25 + 25 + 25 =100). If there are four genes contributing an equal multiplicative effect, the λ_sibling for each locus would be approximately 3.2 (3.2 * 3.2 * 3.2 * 3.2 = 105). This type of information may be useful in determining the power to detect loci in a data set. That is, with a sample size of 100 sibpairs, the power to detect linkage at a locus with λ_sibling = 3.0 is about 85%, and the power to detect linkage at a locus with λ_sibling = 25 would be approaching 100% (Risch 1990b, figure 1). Thus, in this particular case, under either the additive or multiplicative model, one should have sufficient power to detect loci with 100 sibpairs.

      Heritability

      Heritability (h²) is a measurement of the genetic contribution to a trait, or how much of the trait variability can be attributed to genetics rather than other causes. Heritability may be defined in the broad or narrow sense. Heritability in the broad sense is defined as follows:

      (3.4)

where V is the total phenotypic variance, G is the genetic variance of the phenotype, B is the within family variance of the phenotype, and E is the random environmental variance of the phenotype. The genetic variance can be further broken down into the additive (effects of alleles at a particular locus), dominance (effects of allelic interactions at a particular locus), and epistatic variance (effects of allelic interactions from multiple loci). Heritability in the narrow sense is a measure of the additive genetic variation in a trait. Estimates of heritability will vary between 0 and 1, with h² = 0 representing traits that are entirely controlled by nongenetic factors and h² = 1 representing traits that are entirely controlled by genetic factors. Here we will focus simpler methods of calculating heritability in the context of analyses defined in previous sections of the current chapter.

      The correlation coefficient that one obtains from plotting a trait value in one relative versus the trait value in another relative may be used to calculate heritability in the narrow sense, provided that the relatives under consideration are not full siblings:

      (3.5)

      For example, if one plots the age of onset for a condition in a proband versus the age of onset in an affected parent, the square of the correlation coefficient (r², or the slope of the line) obtained from the plot would be divided by 1/2, the number of alleles shared identical by descent (IBD) for a parent–child СКАЧАТЬ