Chemistry and Biology of Non-canonical Nucleic Acids. Naoki Sugimoto
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Название: Chemistry and Biology of Non-canonical Nucleic Acids

Автор: Naoki Sugimoto

Издательство: John Wiley & Sons Limited

Жанр: Химия

Серия:

isbn: 9783527817863

isbn:

СКАЧАТЬ the non-canonical nucleic acids are different from that of canonical duplex. The non-canonical structures are susceptible to a change in solution condition such as pH and cations. The difference can appear as structural properties, especially charge of the nucleic acids and protonation of bases.

      1 Analyze the stability for canonical and non-canonical nucleic acids.

      The thermodynamic parameters for both canonical and non-canonical structures can be estimated using thermal melting curves for the nucleic acid structures. The different equations for melting treatments are required because the unfolding process for the nucleic acids depends on their structures.

      1 1 (a) Breslauer, K.J., Frank, R., Blocker, H., and Marky, L.A. (1986). Proc. Natl. Acad. Sci. U. S. A. 83: 3746–3750.(b) Auffinger, P. and Westhof, E. (2002). Biophys. Chem. 95: 203–210.(c) Auffinger, P. and Westhof, E. (2001). Angew. Chem. Int. Ed. Engl. 40: 4648–4650.(d) Anderson, C.F. and Record, M.T. Jr. (1995). Annu. Rev. Phys. Chem. 46: 657–700.

      2 2 (a) Feig, M. and Pettitt, B.M. (1999). Biophys. J. 77: 1769–1781.(b) Feig, M. and Pettitt, B.M. (1998). Biopolymers 48: 199–209.(c) Spink, C.H. and Chaires, J.B. (1999). Biochemistry 38: 496–508.(d) Nordstrom, L.J., Clark, C.A., Andersen, B. et al. (2006). Biochemistry 45: 9604–9614.(e) Record, M.T. Jr. Anderson, C.F., and Lohman, T.M. (1978). Q. Rev. Biophys. 11: 103–178.(f) Rozners, E. and Moulder, J. (2004). Nucleic Acids Res. 32: 248–254.

      3 3 (a) Sugimoto, N., Nakano, S., Katoh, M. et al. (1995). Biochemistry 34: 11211–11216.(b) Freier, S.M., Kierzek, R., Jaeger, J.A. et al. (1986). Proc. Natl. Acad. Sci. U. S. A. 83: 9373–9377.(c) Petersheim, M. and Turner, D.H. (1983). Biochemistry 22: 256–263.

      4 4 (a) Cantor, C.R. and Schimmel, P.R. (1980). Biophysical Chemistry. New York: W.H. Freeman and Company.(b) Schroeder, S.J. and Turner, D.H. (2009). Methods Enzymol. 468: 371–387.

      5 5 Gralla, J. and Crothers, D.M. (1973). J. Mol. Biol. 73: 497–511.

      6 6 Lyamichev, V.I., Voloshin, O.N., Frank-Kamenetskii, M.D., and Soyfer, V.N. (1991). Nucleic Acids Res. 19: 1633–1638.

      7 7 (a) Nakano, S., Fujimoto, M., Hara, H., and Sugimoto, N. (1999). Nucleic Acids Res. 27: 2957–2965.(b) Singleton, S.F. and Dervan, P.B. (1993). Biochemistry 32: 13171–13179.

      8 8 Kohwi, Y. and Kohwi-Shigematsu, T. (1988). Proc. Natl. Acad. Sci. U. S. A. 85: 3781–3785.

      9 9 Shiman, R. and Draper, D.E. (2000). J. Mol. Biol. 302: 79–91.

      10 10 Williamson, J.R., Raghuraman, M.K., and Cech, T.R. (1989). Cell 59: 871–880.

      11 11 Guschlbauer, W., Chantot, J.F., and Thiele, D. (1990). J. Biomol. Struct. Dyn. 8: 491–511.

      12 12 Manzini, G., Yathindra, N., and Xodo, L.E. (1994). Nucleic Acids Res. 22: 4634–4640.

      13 13 Tateishi-Karimata, H., Nakano, M., Pramanik, S. et al. (2015). Chem. Commun. (Camb.) 51: 6909–6912.

      14 14 (a) Miyoshi, D., Karimata, H., and Sugimoto, N. (2006). J. Am. Chem. Soc. 128: 7957–7963.(b) Miyoshi, D., Nakamura, K., Tateishi-Karimata, H. et al. (2009). J. Am. Chem. Soc. 131: 3522–3531.(c) Tateishi-Karimata, H., Nakano, M., and Sugimoto, N. (2014). Sci. Rep. 4: 3593.

      15 15 Sugimoto, N., Wu, P., Hara, H., and Kawamoto, Y. (2001). Biochemistry 40: 9396–9405.

      16 16 Pilch, D.S., Levenson, C., and Shafer, R.H. (1991). Biochemistry 30: 6081–6088.

      17 17 (a) Xodo, L.E., Manzini, G., Quadrifoglio, F. et al. (1991). Nucleic Acids Res. 19: 5625–5631.(b) Pilch, D.S., Brousseau, R., and Shafer, R.H. (1990). Nucleic Acids Res. 18: 5743–5750.

      18 18 Ramsing, N.B., Rippe, K., and Jovin, T.M. (1989). Biochemistry 28: 9528–9535.

      19 19 Brown, N.M., Rachwal, P.A., Brown, T., and Fox, K.R. (2005). Org. Biomol. Chem. 3: 4153–4157.

      20 20 Breslauer, K.J. (1995). Methods Enzymol. 259: 221–242.

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