Genotyping by Sequencing for Crop Improvement. Группа авторов

Чтение книги онлайн.

СКАЧАТЬ Genetic mapping in pea. 1. RAPD‐based genetic linkage map of Pisum sativum. Theoretical and Applied Genetics 97: 905–915.

      47 Li, H., Vikram, P., Singh, R.P. et al. (2015). A high density GBS map of bread wheat and its application for dissecting complex disease resistance traits. BMC Genomics 16: 216.

      48 Litt, M. and Luty, J.M. (1989). A hypervariable microsatellite revealed by in vitro amplification of a dinucleotide repeat within the cardiac muscle actin gene. American Journal of Human Genetics 44: 397–401.

      49 Liu, Z., Sun, Q., Ni, Z., and Yang, T. (1999). Development of SCAR markers linked to the Pm21 gene conferring resistance to powdery mildew in common wheat. Plant Breeding 118: 215–219.

      50 Lotti, C., Salvi, S., Pasqualone, A. et al. (2000). Integration of AFLP markers into an RFLP‐based map of durum wheat. Plant Breeding 119 (5): 393–401.

      51 Makhoul, M., Rambla, C., Voss‐Fels, K.P. et al. (2020). Overcoming polyploidy pitfalls: a user guide for effective SNP conversion into KASP markers in wheat. Theoretical and Applied Genetics 133 (8): 2413–2430.

      52 Mardis, E.R. (2008). Next generation DNA sequencing methods. Annual Review of Genomics and Human Genetics 9: 387–402.

      53 Matukumalli, L.K., Lawley, C.T., Schnabel, R.D. et al. (2009). Development and characterization of a high density SNP genotyping assay for cattle. PLoS One 4: e5350.

      54 McCouch, S.R., Teytelman, L., Xu, Y. et al. (2002). Development and mapping of 2240 new SSR markers for rice (Oryza sativa L.). DNA Research 9: 199–207.

      55 McCouch, S.R., Zhao, K., Wright, M. et al. (2010). Development of genome‐wide SNP assays for rice. Breeding Science 60: 524–535.

      56 McCouch, S.R., Wright, M.H., Tung, C.‐W. et al. (2015). Open access resources for genome‐wide association mapping in rice. Nature Communications 7: 10532.

      57 Melchinger, A.E., Messemer, M.M., Lee, M. et al. (1991). Diversity and relationship among US maize inbreds revealed by RFLPs. Crop Science 31: 669–678.

      58 Milbourne, D., Meyer, R.C., Collins, A.J. et al. (1998). Isolation, characterization and mapping of simple sequence repeat loci in potato. Molecular & General Genetics 259: 233–245.

      59 Mir, R.R., Hiremath, P.J., Lizarazu‐Riera, O., and Varshney, R.K. (2013). Evolving molecular marker technologies in plants: from RFLPs to GBS. In: Diagnostics in Plant Breeding, https://doi.org/10.1007/978‐94‐007‐5687‐8__11 (eds. T. Lübberstedt and R.K. Varshney). Dordrecht: Springer Science Business Media.

      60 Mullis, K., Faloona, F., Scharf, S. et al. (1986). Specific enzymatic amplication of DNA in vitro: the polymerase chain reaction. Cold Spring Harbor Symposium on Quantitative Biology. 51: 263–273.

      61 Nguyen, K.L., Grondin, A., Courtois, B., and Gantet, P. (2019). Next‐Generation sequencing accelerates crop genome discovery. Trends in Plant Science 24: 263–274.

      62 Olsen, M., Hood, L., Cantor, C., and Botstein, D. (1989). A common language for physical mapping of the human genome. Science 245: 1434–1435.

      63 Orjuela, J., Garavito, A., Bouniol, M. et al. (2010). A universal core genetic map for rice. Theoretical and Applied Genetics 120: 563–572.

      64 Parasnis, A.S., Ramakrishna, W., Chowdari, K.V. et al. (1999). Microsatellite (GATA)n reveals sex‐specific differences in papaya. Theoretical and Applied Genetics 99: 1047–1052.

      65 Paterson, A.H., Tanksley, S.D., and Sorrels, M.E. (1991). DNA markers in crop improvement. Advances in Agronomy 46: 39–90.

      66 Paull, J.G., Chalmers, K.J., Karakousis, A. et al. (1998). Genetic diversity in Australian wheat varieties and breeding material based on RFLP data. Theoretical and Applied Genetics 96: 435–446.

      67 Poland, J. and Rife, T.W. (2012). Genotyping‐by‐sequencing for plant breeding and genetics. Plant Genitics 5: 92–102.

      68 Poland, J.A., Brown, P.J., Sorrells, M.E., and Jannink, J.‐L. (2012). Development of high‐density genetic maps for barley and wheat using a novel two‐enzyme genotyping‐by‐sequencing approach. PLoS One 7 (2): e32253.

      69 Puritz, J.B., Hollenbeck, C.M., and Gold, J.R. (2014). dDocent: a RADseq, variant‐calling pipeline designed for population genomics of non‐model organisms. Peer Journal 2: e431.

      70 Qi, L., Echalier, B., Friebe, B., and Gill, B.S. (2003). Molecular characterization of a set of wheat deletion stocks for use in chromosome bin mapping of ESTs. Functional & Integrative Genomics 3: 39–55. https://doi.org/10.1007/s10142‐002‐0063‐5.

      71 Ramos, A.M., Crooijmans, R.P.M.A., Affara, N.A. et al. (2009). Design of a high density SNP genotyping assay in the pig using SNPs identified and characterized by next generation sequencing technology. PLoS One 4: e6524.

      72 Richard, I. and Beckman, J.S. (1995). How neutral are synonymous codon mutations? Nature Genetics 10: 259.

      73 Roder, M.S., Korzun, V., Wendehake, K. et al. (1998). A microsatellite map of wheat. Genetics 149: 2007–2023.

      74 Rosas, J.E., Bonnecarrère, V., and Pérez de Vida, V.F. (2014). One‐step, codominant detection of imidazolinone resistance mutations in weedy rice (Oryza sativa L.). Electronic Journal of Biotechnology 17: 95–101.

      75 Sachidanandam, R., Weissman, D., Schmidt, S.C. et al. (2001). A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms. Nature 409 (6822): 928–933.

      76 Sanger, F., Nicklen, S., and Coulson, A.R. (1977). DNA sequencing with chain chain‐terminating inhibitors. Proceedings of the National Academy Sciences of the United States of America 74: 5463–5467.

      77 Semagn, K., Bjornstad, A., and Ndjiondjop, M.N. (2006). An overview of molecular marker methods for plants. African Journal of Biotechnology 5 (25): 2540–2568.

      78 Semagn, K., Babu, R., Hearne, S., and Olsen, M. (2013). Single nucleotide polymorphism genotyping using Kometitive allele specific PCR (KASP): overview of the technology and its application in crop improvement. Molecular Breeding 33: 1–14.

      79 Sharopova, N., McMullen, M.D., Schultz, L. et al. (2002). Development and mapping of SSR markers for maize. Plant Molecular Biology 48: 463–481.

      80 Shendure, J.A., Porreca, G.J., Church, G.M. et al. (2011). Overview of DNA sequencing strategies. Current Protocols in Molecular Biology 7 (1): 1–7.1.23. https://doi.org/10.1002/0471142727.mb0701s96.

      81 Sidhu, G.K., Rustgi, S., Shafqat, M.N. et al. (2008). Fine structure mapping of a gene‐rich region ofwheat carrying Ph1, a suppressor of crossing over between homoeologous chromosomes. Proceedings of the National Academy Sciences of the United States of America 15: 5815–5820.

      82 Sim, S.‐C., Durstewitz, G., Plieske, J. et al. (2012). Development of a large SNP genotyping array and generation of high‐density genetic maps in tomato. PLoS One 7 (7): e40563. https://doi.org/10.1371/journal.pone.0040563.

      83 Singh, B.D. and Singh, A.K. (2015). Marker‐Assisted Plant Breeding: Principles and Practices. https://doi.org/10.1007/978‐81‐322‐2316‐0. СКАЧАТЬ